Integrated Publishing Toolkit(IPT)

free and open access to biodiversity data

Checklist of rust fungi (Pucciniales) occurring in Portugal

Latest version published by Instituto Superior de Agronomia / Universidade de Lisboa on Sep 7, 2018 Instituto Superior de Agronomia / Universidade de Lisboa

The order Pucciniales encompasses over 5000 recognised species, grouped in 120 genera. Commonly known as rust fungi, they are strict biotrophic pathogens of vascular plants, often responsible for important economic losses in agriculture and forestry. Other species are often uncommon and could be endangered. Portugal, including the Macaronesian archipelagos of Azores and Madeira, is geographically placed in a confluence point between Europe, Africa and America, and it may be a natural or human-driven entry-point of exotic biological entities into mainland Europe. In this work we have retrieved and analysed data for 2313 occurrences of rust fungi from 253 species based on 115 publications and our own surveys. This list was updated according to current taxonomic framework and georeferenced using the GBIF platform. The present checklist includes host names, seasonality, life cycle stage, geographical distribution and comments. A list of rust fungus sorted according to their host plants was also prepared. Altogether, this will provide a tool for diagnosis of rust fungi occurring in Portugal (and elsewhere in Europe), enabling to understand their spatiotemporal dynamics and to point out recent introduction of exotic species, along with situations of potential conservationistic value.

Data Records

The data in this checklist resource has been published as a Darwin Core Archive (DwC-A), which is a standardized format for sharing biodiversity data as a set of one or more data tables. The core data table contains 248 records. 2 extension data tables also exist. An extension record supplies extra information about a core record. The number of records in each extension data table is illustrated below.

  • Taxon (core)
    248
  • Occurrence 
    2312
  • Distribution 
    2096

This IPT archives the data and thus serves as the data repository. The data and resource metadata are available for download in the downloads section. The versions table lists other versions of the resource that have been made publicly available and allows tracking changes made to the resource over time.

Downloads

Download the latest version of this resource data as a Darwin Core Archive (DwC-A) or the resource metadata as EML or RTF:

Data as a DwC-A file download 248 records in English (322 KB) - Update frequency: unknown
Metadata as an EML file download in English (19 KB)
Metadata as an RTF file download in English (19 KB)

Versions

The table below shows only published versions of the resource that are publicly accessible.

How to cite

Researchers should cite this work as follows:

Talhinhas P, Carvalho R, Figueira R, Ramos A P (2018): Checklist of rust fungi (Pucciniales) occurring in Portugal. v1.3. Instituto Superior de Agronomia / Universidade de Lisboa. Dataset/Checklist. https://ipt.isa.ulisboa.pt/ipt_isa/resource?r=pucciniack_pt&v=1.3

Rights

Researchers should respect the following rights statement:

The publisher and rights holder of this work is Instituto Superior de Agronomia / Universidade de Lisboa. This work is licensed under a Creative Commons Attribution (CC-BY) 4.0 License.

GBIF Registration

This resource has been registered with GBIF, and assigned the following GBIF UUID: fc5d3109-95a2-47ae-8bfd-1667fc2b12cc.  Instituto Superior de Agronomia / Universidade de Lisboa publishes this resource, and is itself registered in GBIF as a data publisher endorsed by GBIF Portugal.

Keywords

Checklist; Inventoryregional; Portugal; rust fungi

Contacts

Who created the resource:

Pedro Talhinhas
Researcher
Instituto Superior de Agronomia, Universidade de Lisboa Tapada da Ajuda Lisbon PT
Rita Carvalho
Researcher
Instituto Superior de Agronomia, Universidade de Lisboa Tapada da Ajuda Lisbon PT
Rui Figueira
Researcher
Instituto Superior de Agronomia, Universidade de Lisboa Tapada da Ajuda Lisbon PT
Ana Paula Ramos
Researcher
Instituto Superior de Agronomia, Universidade de Lisboa Tapada da Ajuda Lisbon PT

Who can answer questions about the resource:

Pedro Talhinhas
Researcher
Instituto Superior de Agronomia, Universidade de Lisboa Tapada da Ajuda Lisbon PT

Who filled in the metadata:

Pedro Talhinhas
Researcher
Instituto Superior de Agronomia, Universidade de Lisboa Tapada da Ajuda Lisbon PT

Who else was associated with the resource:

User
Rui Figueira

Geographic Coverage

Geographic distribution in mainland Portugal by “Distrito” and in Azores and Madeira by island.

Bounding Coordinates South West [31.579, -32.168], North East [42.423, -6.064]

Taxonomic Coverage

Rust fungi (Basidiomycota, Pucciniales)

Kingdom  Fungi
Phylum  Basidiomycota
Class  Pucciniomycetes
Order  Pucciniales

Temporal Coverage

Start Date / End Date 1902-12-01 / 2017-08-15

Project Data

No Description available

Title Checklist of rust fungi (Pucciniales) occurring in Portugal
Funding The authors acknowledge financial support by the Fundação para a Ciência e a Tecnologia (Portugal) through the research project PTDC/BIA-MIC/1716/2014 and unit funding UID/AGR/04129/2013).

The personnel involved in the project:

Sampling Methods

No Description available

Method step description:

  1. Georeferencing was performed following Chapman and Wieczorek (2006), using Google Maps to retrieve coordinates based on searches of record localities, complemented, when needed, by the use of the Portuguese gazetteer and online GIS tools provided by Centro de Informação Geoespacial do Exército, Portugal (http://www.igeoe.pt/igeoesig/).
  2. Scientific names, both of the fungi and the host plants, were check for potential synonyms in Index Fungorum/Species Fungorum (http://www.speciesfungorum.org/Names/Names.asp) and The Plant List (http://www.theplantlist.org/) web sites respectively. Ecological information on the host plants in Portugal was retrieved using the Flora–On web site http://www.flora-on.pt.

Bibliographic Citations

  1. Gonçalves da Cunha, A. (1936). Uredíneas de Portugal. Boletim da Sociedade Broteriana 21: 169-266.
  2. Câmara, E.S. (1931). Mycetes aliquot novi aliique in Mycoflora Lusitaniae ignoti III. Anais do Instituto Superior de Agronomia 4:200-208
  3. Gjaerum, H.B. (1982). Rust fungi from Madeira. Boletim do Museu Municipal do Funchal 34: 5-22.
  4. Gjaerum, H.B. & Dennis, R.W.G. (1976). Additions to the rust flora (Uredinales) of the Azores. Vieraea 6(1): 103-120.
  5. Tavares, S.; Ramos, A.P.; Pires, A.S.; Azinheira, H.G.; Caldeirinha, P.; Link, T.; Abranches, R.; Silva, M.C.; Voegele, R.T.; Loureiro, J. & Talhinhas, P. (2014). Genome size analyses of Pucciniales reveal the largest fungal genomes. Frontiers in Plant Science 5:422.
  6. Ramos, A.P.; Tavares, S.; Tavares, D.; Silva, M.C.; Loureiro, J. Talhinhas, P. (2015). Flow cytometry reveals that the rust fungus Uromyces bidentis (Pucciniales) possesses the largest fungal genome reported, 2,489 Mbp. Molecular Plant Pathology 16(9): 1006-1010.
  7. Talhinhas, P.; Ramos, A.P.; Tavares, D.; Tavares, S. & Loureiro, J. (2015). Genome size estimates for six rust (Pucciniales) species. Revista de Ciências Agrárias 38(2): 178-185.
  8. Talhinhas, P.; Silva, E.; Nunes, N. & Ramos, A.P. (2016). First report of Puccinia thaliae causing rust on canna in Europe. Plant Disease 100(6):1242.
  9. Silva, E.; Carvalho, R.; Nunes, N.; Ramos, A.P. & Talhinhas, P. (2016). First report of Puccinia hemerocallidis causing daylily rust in Europe. Plant Disease 100(10):2163.
  10. Gjaerum, H.B. (1990). Additions to the Knowledge of the rust flora of Portugal. Lidia 3:28-30
  11. Câmara, E.S.; Oliveira, A.L.B. & Luz, C.G. (1939). Uredales aliquot Lusitaniae I. Agronomia Lusitana 1(4):410-434
  12. Câmara, E.S.; Oliveira, A.L.B. & Luz, C.G. (1940). Uredales aliquot Lusitaniae I (cont.). Agronomia Lusitana 2(2):113-167
  13. Câmara, E.S.; Oliveira, A.L.B. & Luz, C.G. (1943). Uredales aliquot Lusitaniae III. Agronomia Lusitana 5(4):317-347
  14. Câmara, E.S.; Oliveira, A.L.B. & Luz, C.G. (1940). Uredales aliquot Lusitaniae II. Agronomia Lusitana 2(4):337-377
  15. Câmara, M.S. (1919). Mycetes aliquot novi alique in mycoflora Lusitaniae ignoti. Revista Agronómica 14:49-59
  16. Câmara, E.S. (1951). Mycetes aliquot Lusitaniae XII. Agronomia Lusitana 13(3):185-212
  17. Câmara, E.S. (1949). Mycetes aliquot Lusitaniae X. Agronomia Lusitana 11(3):165-189
  18. Câmara, E.S. (1949). Mycetes aliquot Lusitaniae X. Agronomia Lusitana 11(1):39-73
  19. Câmara, E.S. (1948). Mycetes aliquot Lusitaniae VIII. Agronomia Lusitana 10(4):279-320
  20. Câmara, E.S. & Luz, C.G. (1939). Mycetes aliquot Lusitaniae III. Agronomia Lusitana 1(2):167-199
  21. Costa, M.E.A.P. & Câmara, E.S. (1952). Species aliquae mycologicae Lusitaniae II. Portugaliae Acta Biologica (B) 3(3):294-307
  22. Costa, M.E.A.P. & Câmara, E.S. (1954). Species aliquae mycologicae Lusitaniae III. Portugaliae Acta Biologica (B) 4(3):331-345
  23. Costa, M.E.A.P. & Câmara, E.S. (1955). Species aliquae mycologicae Lusitaniae IV. Portugaliae Acta Biologica (B) 17:153-165
  24. Costa, M.E.A.P. (1959). Species aliquae mycologicae Lusitaniae V. Portugaliae Acta Biologica (B) 6(3):219-231
  25. Costa, M.E.A.P. (1962). Species aliquae mycologicae Lusitaniae VI. Portugaliae Acta Biologica (B) 7(4):277-287
  26. Dias, M.R.S. & Câmara, E.S. (1952). Fungi Lusitaniae I. Agrononomia Lusitana 14(2): 101-125
  27. Lucas, M.T. & Câmara, E.S. (1952). Fungi Lusitaniae II. Agronomia Lusitana 14(3): 193-227
  28. Câmara, E.S. & Vasconcelos, A.T. (1952). Fungi Lusitaniae III. Agronomia Lusitana 14(4): 249-257
  29. Dias, M.T. & Câmara, E.S.(1953). Fungi Lusitaniae IV. Agronomia Lusitana 15(1): 17-36
  30. Lucas, M.T. & Câmara, E.S. (1952). Fungi Lusitaniae II. Agronomia Lusitana 15(2): 154-180
  31. Câmara, E.S. & Vasconcelos, A.T. (1953). Fungi Lusitaniae VI. Agronomia Lusitana 15(3): 183-190
  32. Dias, M.R.S. & Câmara, E.S. (1954). Fungi Lusitaniae VII. Agronomia Lusitana 16(1): 5-15
  33. Lucas, M.T. & Câmara, E.S. (1954). Fungi Lusitaniae VIII. Agronomia Lusitana 16(2): 81-104
  34. Santos, A.C. & Câmara, E.S. (1954). Fungi Lusitaniae IX. Agronomia Lusitana 16(3): 175-190
  35. Câmara, E.S. & Vasconcelos, A.T. (1955). Fungi Lusitaniae X. Agronomia Lusitana 17(2): 91-100
  36. Santos, A.C. & Câmara, E.S. (1955). Fungi Lusitaniae XIII. Agronomia Lusitana 17: 135-152
  37. Lucas, M.T. & Câmara, E.S. (1955). Fungi Lusitaniae XII. Agronomia Lusitana 17: 115-131
  38. Dias, M.R.S. & Câmara, E.S. (1955). Fungi Lusitaniae XI. Agronomia Lusitana 17(2): 101-113
  39. Lucas, M.T. (1956). Fungi Lusitaniae XIV. Agronomia Lusitana 18(2): 109-122
  40. Dias, M.R.S. (1956). Fungi Lusitaniae XV. Agronomia Lusitana 18(4): 237-242
  41. Lucas, M.T. (1957). Fungi Lusitaniae XVI. Agronomia Lusitana 19(1): 23-29
  42. Dias, M.R.S. & Teixeira, R.S.S. (1962). Fungi Lusitaniae XVIII. Agronomia Lusitana 24(1): 33-38
  43. Dias, M.R.S. & Lucas, M.R.S. (1962). Fungi Lusitaniae XIX. Agronomia Lusitana 24(1): 39-43
  44. Dias, M.R.S. & Lucas, M.R.S. (1965). Fungi Lusitaniae XX. Agronomia Lusitana 26(1): 5-19
  45. Dias, M.R.S. & Lucas, M.R.S. (1965). Fungi Lusitaniae XXI. Agronomia Lusitana 27(2): 87-95
  46. Dias, M.R.S. & Lucas, M.R.S. (1966). Fungi Lusitaniae XXII. Agronomia Lusitana 28(3-4): 125-131
  47. Dias, M.R.S. & Lucas, M.R.S. (1972). Fungi Lusitaniae XXIII. Agronomia Lusitana 33: 173-184
  48. Dias, M.R.S. & Lucas, M.R.S. (1974). Fungi Lusitaniae XXIV. Agronomia Lusitana 35(2): 137-144
  49. Dias, M.R.S. & Lucas, M.R.S. (1975). Fungi Lusitaniae XXV. Agronomia Lusitana 37(1): 95-103
  50. Dias, M.R.S. & Lucas, M.R.S. (1978). Fungi Lusitaniae XXV. Agronomia Lusitana 38(4): 285-295
  51. Dias, M.R.S. & Lucas, M.R.S. (1980). Fungi Lusitaniae XXVII. Agronomia Lusitana 40(2): 135-144
  52. Dias, M.R.S., Lucas, M.R.S. & Lopes, M.C. (1981). Fungi Lusitaniae XXVIII. Agronomia Lusitana 41(2): 77-92
  53. Dias, M.R.S., Lucas, M.R.S. & Lopes, M.C. (1982). Fungi Lusitaniae XXIX. Agronomia Lusitana 41(3-4): 175-192
  54. Dias, M.R.S., Lucas, M.R.S. & Lopes, M.C. (1987). Fungi Lusitaniae XXX. Agronomia Lusitana 42(3-4): 179-188
  55. Câmara, E.S. (1932). Contribuitiones ad Mycofloram Lusitaniae X. Revista Agronómica 20(1):5-63
  56. Câmara, E.S. & Luz, C. (1939). Mycetes aliquot Lusitaniae II. Agronomia Lusitana 1(1):41-63

Additional Metadata

Alternative Identifiers fc5d3109-95a2-47ae-8bfd-1667fc2b12cc
https://ipt.isa.ulisboa.pt/ipt_isa/resource?r=pucciniack_pt